Deliverable D3.2 – Integrative analysis of multiple data types within cancer portals
Deliverable D3.2 outlines the development of a portable, federated system for integrated analysis of standardized cancer data types, including clinical, radiomic, time series, and DNA variant data. It ensures compliance with FAIR data practices and leverages established analytical tools to enable local adaptation. A key feature is the integration of cBioPortal with the Galaxy workflow […]
Deliverable D5.3 – First content of the RDMkit Cancer View
This Deliverable D5.3 focuses on the WP5 initiative within EOSC4Cancer, which aims to empower clinicians and cancer researchers through capacity building by designing a coherent training portfolio related to cancer data research following the national needs, and complementary to national efforts. This document outlines the initial design process of a dedicated RDMkit Cancer View will […]
Deliverable D7.5 – EOSC Policy Brief
EOSC4Cancer’s Deliverable 7.5 outlines EOSC4Cancer Project results and outcomes, including links to other Research Infrastructures and the European Open Science Cloud (EOSC) Family. EOSC4Cancer accelerates data-driven cancer research, focusing on colorectal cancer, integrating platforms like Galaxy, OpenVRE, and cBioPortal, and ensuring FAIR principles. A key challenge is managing sensitive health data under GDPR. Collaborating with […]
Deliverable D3.1 – Molecular Tumour Board Portal Interoperability
EOSC4Cancer’s Deliverable 3.1 details the advancements made in Task 3.1, focusing on theenhancement of interoperability between clinical trial databases and Clinical Decision Support Systems (CDSS) for oncology. The document’s principal authors are Macha Nikolski of Centre National de la Recherche Scientifique (CNRS) and David Tamborero of Karolinska Instituet (KI) working within Work Package 3. Task 3.1 develops a data model that captures […]
Deliverable D2.4 – Reference Beacon Implementation for EOSC4Cancer
EOSC4Cancer’s Deliverable 2.4 explores the key functionalities of Beacon, a genomic discovery tool that allows the aggregation of worldwide genomics datasets through a shared query protocol, applied to the cancer field with examples adapted to colon cancer use cases. The document’s principal authors are Jordi Rambla and Teresa García Lezana of the Centre for Genomic Regulation […]
SENSITIVE Deliverable D4.1 – Use Case Demonstrator Package
EOSC4Cancer’s Deliverable 4.1 provides an overview of the data available from EOSC4Cancer use cases 4.1, 4.2, 4.3 and 4.4 for the technical Work Packages. The document’s principal authors are Mariska Bierkens of Nederlands Kanker Institut (NKI) and Sophie Huiskens-Berends of Lygature, working within Work Package 4.
SENSITIVE Deliverable D7.1 – Project Handbook
EOSC4Cancer’s Deliverable 7.1 provides an overview of the management and administrative procedures of the EOSC4Cancer Project in order to facilitate efficient project execution as well as high-quality project results. The document’s principal authors are Romina Royo and Raquel Villodres of Barcelona Supercomputing Center (BSC) working within the Project Management Team.
SENSITIVE Deliverable D3.4 – Curated Repository for Biomarker-driven Clinical Trials
EOSC4Cancer’s Deliverable 3.4 explores the Molecular Clinical Trials Match (MCTM), geared towards automating the matching between the results of molecular diagnostic assays in tumors and up-to-date information on clinical trials eligibility criteria creating a system supporting efficient curation and access to the information needed to do so. The document’s principal author is David Tamborero of Karolinska Instituet […]
Deliverable D7.2 – Data Management Plan
EOSC4Cancer’s Deliverable 7.2 provides information as to what the relevant project components and repositories are (from each WP) and how they are managed This deliverable’s main authors are Dr. Ilaria Anna C. and Kurt Majcen, members of Work Package 7 partner BBMRI-ERIC. WP7 is consistently working towards establishment of the governance structure and data management […]
Deliverable D1.3 – Initial Data Resources Map
EOSC4Cancer’s Deliverable 1.3 is one of the first among a series of public deliverables that will be published to highlight the project’s efforts and results. The document is authored by Morris Swertz, Gerieke Been, Joeri van der Velde, and Ype Zijlstra, our project partners at UMCG, who along with other members of Work Package 1 […]